gtex-pipeline gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2

GTEx & TOPMed data production and analysis pipelines.

Accessing gtex-pipeline gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2

To load the module for gtex-pipeline gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load gtex-pipeline/gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the gtex-pipeline website.

Dependencies

This version of gtex-pipeline has a direct dependency on: FastQTL/2.184_gtex-47180b9-foss-2019b-Python-3.7.4-R-3.6.2 foss/2019b picard/2.21.1-Java-11 Python/3.7.4-GCCcore-8.3.0 R/3.6.2-foss-2019b RNA-SeQC/1.1.8-foss-2019b-Java-11 RSEM/1.3.2-foss-2019b STAR/2.7.2b-GCC-8.3.0

Last modified on 17th June 2020