CellBender 0.2.0-foss-2021a-CUDA-11.3.1
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.Accessing CellBender 0.2.0-foss-2021a-CUDA-11.3.1
To load the module for CellBender 0.2.0-foss-2021a-CUDA-11.3.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load CellBender/0.2.0-foss-2021a-CUDA-11.3.1
There is a CPU version of this module: CellBender 0.2.0-foss-2021a
BEAR Apps Version
Architectures
EL8-icelake (GPUs: NVIDIA A100, NVIDIA A30) — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- anndata 0.8.0
- CellBender 0.2.0
- natsort 8.1.0
- opt_einsum 3.3.0
- pyro-api-0.1.2
- pyro-ppl-1.7.0
- sphinx-argparse-0.3.1
- sphinx_autodoc_typehints 1.15.1
- sphinx_rtd_theme 1.0.0
- sphinxcontrib-programoutput-0.17
More Information
For more information visit the CellBender website.
Dependencies
This version of CellBender has a direct dependency on: CUDA/11.3.1 foss/2021a h5py/3.2.1-foss-2021a matplotlib/3.4.2-foss-2021a PyTables/3.6.1-foss-2021a Python/3.9.5-GCCcore-10.3.0 PyTorch/1.10.0-foss-2021a-CUDA-11.3.1 scikit-learn/0.24.2-foss-2021a tqdm/4.61.2-GCCcore-10.3.0
Other Versions
These versions of CellBender are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Version | BEAR Apps Version |
---|---|
0.2.0-foss-2021a | 2021a |
Last modified on 31st May 2022