BEAR Applications

Amber 22.0-foss-2021b-AmberTools-22.3-CUDA-11.4.1

Deprecated: Use of this version of Amber is deprecated. More information on our Applications Support and Retention Policy.

There is a newer version of Amber

Amber (originally Assisted Model Building with Energy Refinement) is software for performing molecular dynamics and structure prediction.

Accessing Amber 22.0-foss-2021b-AmberTools-22.3-CUDA-11.4.1

To load the module for Amber 22.0-foss-2021b-AmberTools-22.3-CUDA-11.4.1 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load Amber/22.0-foss-2021b-AmberTools-22.3-CUDA-11.4.1

BEAR Apps Version

2018b

More Information

For more information visit the Amber website.

Dependencies

This version of Amber has a direct dependency on: Boost/1.77.0-GCC-11.2.0 bzip2/1.0.8-GCCcore-11.2.0 CUDA/11.4.1 foss/2021b libreadline/8.1-GCCcore-11.2.0 matplotlib/3.4.3-foss-2021b NCCL/2.10.3-GCCcore-11.2.0-CUDA-11.4.1 netCDF/4.8.1-gompi-2021b netCDF-Fortran/4.5.3-gompi-2021b Perl/5.34.0-GCCcore-11.2.0 PnetCDF/1.12.3-gompi-2021b Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b Tkinter/3.9.6-GCCcore-11.2.0 UCX-CUDA/1.11.2-GCCcore-11.2.0-CUDA-11.4.1 X11/20210802-GCCcore-11.2.0 zlib/1.2.11-GCCcore-11.2.0

Other Versions

These versions of Amber are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 5th May 2023