BEAR Applications

BioServices 1.10.1-foss-2021b

Deprecated: Use of this version of BioServices is deprecated. More information on our Applications Support and Retention Policy.

Bioservices is a Python package that provides access to many Bioinformatices Web Services (e.g., UniProt) and a framework to easily implement Web Services wrappers (based on WSDL/SOAP or REST protocols).

Accessing BioServices 1.10.1-foss-2021b

To load the module for BioServices 1.10.1-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load BioServices/1.10.1-foss-2021b

BEAR Apps Version

2018b

Extensions

• BioServices 1.10.1
• cattrs 22.1.0
• colorlog 6.6.0
• easydev 0.12.0
• exceptiongroup 1.0.0rc8
• flit 3.7.1
• flit_core 3.7.1
• flit_scm 1.6.2
• gevent 21.12.0
• greenlet 1.1.2
• grequests 0.6.0
• requests-cache-0.9.5
• setuptools_scm 6.4.2
• suds-community-1.1.2
• tomli 2.0.1
• tomli_w 1.0.0
• url-normalize-1.4.3
• wrapt 1.14.1
• xmltodict 0.13.0
• zope.event 4.5.0
• zope.interface 5.4.0

More Information

For more information visit the BioServices website.

Dependencies

This version of BioServices has a direct dependency on: BeautifulSoup/4.10.0-GCCcore-11.2.0 foss/2021b lxml/4.6.3-GCCcore-11.2.0 matplotlib/3.4.3-foss-2021b Python/3.9.6-GCCcore-11.2.0 scikit-learn/1.0.1-foss-2021b SciPy-bundle/2021.10-foss-2021b tqdm/4.62.3-GCCcore-11.2.0

Required By

This version of BioServices is a direct dependent of: BEAR-Python-MSc-Bioinformatics/2021b-foss-2021b

Other Versions

These versions of BioServices are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 10th August 2022