BEAR Applications

BioServices 1.7.9-foss-2020a-Python-3.8.2

Deprecated: Use of this version of BioServices is deprecated. More information on our Applications Support and Retention Policy.

There is a newer version of BioServices

Bioservices is a Python package that provides access to many Bioinformatices Web Services (e.g., UniProt) and a framework to easily implement Web Services wrappers (based on WSDL/SOAP or REST protocols).

Accessing BioServices 1.7.9-foss-2020a-Python-3.8.2

To load the module for BioServices 1.7.9-foss-2020a-Python-3.8.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load BioServices/1.7.9-foss-2020a-Python-3.8.2

BEAR Apps Version

2018b

Extensions

• BioServices 1.7.9
• colorama 0.4.4
• colorlog 4.4.0
• easydev 0.10.1
• flit 3.0.0
• flit_core 3.0.0
• gevent 20.9.0
• greenlet 0.4.17
• grequests 0.6.0
• pexpect 4.8.0
• ptyprocess 0.6.0
• requests-cache-0.5.2
• suds-jurko-0.6
• wrapt 1.12.1
• xmltodict 0.12.0
• zope.event 4.5.0
• zope.interface 5.1.2

More Information

For more information visit the BioServices website.

Dependencies

This version of BioServices has a direct dependency on: BeautifulSoup/4.9.1-GCCcore-9.3.0-Python-3.8.2 foss/2020a lxml/4.5.2-GCCcore-9.3.0 matplotlib/3.2.1-foss-2020a-Python-3.8.2 Python/3.8.2-GCCcore-9.3.0 scikit-learn/0.23.2-foss-2020a-Python-3.8.2 SciPy-bundle/2020.03-foss-2020a-Python-3.8.2

Required By

This version of BioServices is a direct dependent of: BEAR-Python-MSc-Bioinformatics/2020a-foss-2020a-Python-3.8.2

Other Versions

These versions of BioServices are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 2nd November 2020