Deprecated: Use of this version of CMSeq is deprecated. More information on our Applications Support and Retention Policy.CMSeq is a set of commands to provide an interface to .bam files for coverage and sequence consensus.
Accessing CMSeq 1.0.4-foss-2021b
To load the module for CMSeq 1.0.4-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load CMSeq/1.0.4-foss-2021b
BEAR Apps Version
For more information visit the CMSeq website.
This version of CMSeq has a direct dependency on: bcbio-gff/0.6.9-foss-2021b biom-format/2.1.12-foss-2021b Biopython/1.79-foss-2021b foss/2021b Pysam/0.18.0-GCC-11.2.0 Python/3.9.6-GCCcore-11.2.0 SAMtools/1.15.1-GCC-11.2.0 SciPy-bundle/2021.10-foss-2021b
This version of CMSeq is a direct dependent of: MetaPhlAn/3.0.14-foss-2021b
Last modified on 14th July 2022