CellPhoneDB 3.1.0-foss-2020b

Deprecated: Use of this version of CellPhoneDB is deprecated. More information on our Applications Support and Retention Policy.

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

Accessing CellPhoneDB 3.1.0-foss-2020b

To load the module for CellPhoneDB 3.1.0-foss-2020b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load CellPhoneDB/3.1.0-foss-2020b

BEAR Apps Version

2018b

Extensions

  • aniso8601 8.1.0
  • anndata 0.7.5
  • boto3 1.16.14
  • botocore 1.19.14
  • CellPhoneDB 3.1.0
  • click 7.1.2
  • docutils 0.16
  • fbpca 1.0
  • Flask 1.1.2
  • Flask-RESTful-0.3.8
  • Flask-Testing-0.8.1
  • geosketch 0.3
  • greenlet 0.4.17
  • h5py 2.10.0
  • idna 2.10
  • itsdangerous 1.1.0
  • Jinja2 2.11.2
  • jmespath 0.10.0
  • MarkupSafe 1.1.1
  • natsort 7.1.0
  • numpy_groupies 0.9.13
  • pika 1.2.0
  • PyYAML 5.4.1
  • requests 2.25.0
  • rpy2 3.4.1
  • s3transfer 0.3.3
  • scikit-learn-0.22
  • simplegeneric 0.8.1
  • SQLAlchemy 1.3.20
  • tzlocal 2.1
  • urllib3 1.25.11
  • Werkzeug 1.0.1

More Information

For more information visit the CellPhoneDB website.

Dependencies

This version of CellPhoneDB has a direct dependency on: foss/2020b Python/3.8.6-GCCcore-10.2.0 R/4.0.3-foss-2020b SciPy-bundle/2020.11-foss-2020b tqdm/4.56.2-GCCcore-10.2.0

Last modified on 25th January 2023