Cellpose 2.2-foss-2022a

Deprecated: Use of this version of Cellpose is deprecated. More information on our Applications Support and Retention Policy.

a generalist algorithm for cellular segmentation

Accessing Cellpose 2.2-foss-2022a

To load the module for Cellpose 2.2-foss-2022a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Cellpose/2.2-foss-2022a

There is a GPU enabled version of this module: Cellpose 2.2-foss-2022a-CUDA-11.7.0

BEAR Apps Version

2018b

Extensions

  • Cellpose 2.2
  • fastremap 1.13.4
  • imagecodecs 2023.1.23
  • natsort 8.2.0
  • pyqtgraph 0.13.1
  • superqt 0.4.0
  • tifffile 2023.2.3

More Information

For more information visit the Cellpose website.

Dependencies

This version of Cellpose has a direct dependency on: foss/2022a numba/0.56.4-foss-2022a OpenCV/4.6.0-foss-2022a-contrib PyQt5/5.15.5-GCCcore-11.3.0 Python/3.10.4-GCCcore-11.3.0 PyTorch/1.12.1-foss-2022a QtPy/2.3.0-GCCcore-11.3.0 tqdm/4.64.0-GCCcore-11.3.0

Other Versions

These versions of Cellpose are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 14th February 2023