DRAM 1.3.6-foss-2021b

Deprecated: Use of this version of DRAM is deprecated. More information on our Applications Support and Retention Policy.

DRAM (Distilled and Refined Annotation of Metabolism) is a tool for annotating metagenomic assembled genomes and VirSorter identified viral contigs. DRAM annotates MAGs and viral contigs using KEGG (if provided by the user), UniRef90, PFAM, dbCAN, RefSeq viral, VOGDB and the MEROPS peptidase database as well as custom user databases.

Accessing DRAM 1.3.6-foss-2021b

To load the module for DRAM 1.3.6-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load DRAM/1.3.6-foss-2021b

BEAR Apps Version

2018b

Extensions

  • altair 4.2.0
  • DRAM-bio-1.3.6
  • et-xmlfile-1.1.0
  • greenlet 1.1.2
  • openpyxl 3.0.9
  • SQLAlchemy 1.4.40
  • toolz 0.12.0

More Information

For more information visit the DRAM website.

Dependencies

This version of DRAM has a direct dependency on: barrnap/0.9-gompi-2021b foss/2021b HMMER/3.3.2-gompi-2021b MMseqs2/13-45111-gompi-2021b networkx/2.6.3-foss-2021b parallel/20210722-GCCcore-11.2.0 prodigal/2.6.3-GCCcore-11.2.0 Python/3.9.6-GCCcore-11.2.0 Ruby/3.0.1-GCCcore-11.2.0 scikit-bio/0.5.7-foss-2021b SciPy-bundle/2021.10-foss-2021b tRNAscan-SE/2.0.9-GCCcore-11.2.0

Last modified on 25th August 2022