BEAR Applications

GTDB-Tk 2.0.0-foss-2021a

Deprecated: Use of this version of GTDB-Tk is deprecated. More information on our Applications Support and Retention Policy.

A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Accessing GTDB-Tk 2.0.0-foss-2021a

To load the module for GTDB-Tk 2.0.0-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load GTDB-Tk/2.0.0-foss-2021a

BEAR Apps Version

2018b

More Information

For more information visit the GTDB-Tk website.

Dependencies

This version of GTDB-Tk has a direct dependency on: DendroPy/4.5.2-GCCcore-10.3.0 FastANI/1.33-GCC-10.3.0 FastTree/2.1.11-GCCcore-10.3.0 foss/2021a HMMER/3.3.2-gompi-2021a Mash/2.3-GCC-10.3.0 matplotlib/3.4.2-foss-2021a pplacer/1.1.alpha19 prodigal/2.6.3-GCCcore-10.3.0 Python/3.9.5-GCCcore-10.3.0 tqdm/4.61.2-GCCcore-10.3.0

Last modified on 22nd April 2022