HMMER 3.3.2-gompi-2022a

Deprecated: Use of this version of HMMER is deprecated. More information on our Applications Support and Retention Policy.

HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.

Accessing HMMER 3.3.2-gompi-2022a

To load the module for HMMER 3.3.2-gompi-2022a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load HMMER/3.3.2-gompi-2022a

BEAR Apps Version

2018b

More Information

For more information visit the HMMER website.

Dependencies

This version of HMMER has a direct dependency on: gompi/2022a

Required By

This version of HMMER is a direct dependent of: AlphaFold/2.3.1-foss-2022a-CUDA-11.7.0 AlphaFold/2.3.1-foss-2022a

Other Versions

These versions of HMMER are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 4th April 2023