Deprecated: Use of this version of HOMER is deprecated. More information on our Applications Support and Retention Policy.HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis. It is a collection of command line programs for unix-style operating systems written in Perl and C++. HOMER was primarily written as a de novo motif discovery algorithm and is well suited for finding 8-20 bp motifs in large scale genomics data. HOMER contains many useful tools for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of functional genomics sequencing data sets.
Accessing HOMER 4.11-foss-2020a
To load the module for HOMER 4.11-foss-2020a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load HOMER/4.11-foss-2020a
BEAR Apps Version
For more information visit the HOMER website.
This version of HOMER has a direct dependency on: foss/2020a Perl/5.30.2-GCCcore-9.3.0 R/4.0.0-foss-2020a R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0 SAMtools/1.10-GCC-9.3.0
These versions of HOMER are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 27th July 2021