Kraken 1.1.1-GCCcore-9.3.0

Deprecated: Use of this version of Kraken is deprecated. More information on our Applications Support and Retention Policy.

Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm.

Accessing Kraken 1.1.1-GCCcore-9.3.0

To load the module for Kraken 1.1.1-GCCcore-9.3.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Kraken/1.1.1-GCCcore-9.3.0

BEAR Apps Version

2018b

More Information

For more information visit the Kraken website.

Dependencies

This version of Kraken has a direct dependency on: GCCcore/9.3.0 Perl/5.30.2-GCCcore-9.3.0 wget/1.20.3-GCCcore-9.3.0

Required By

This version of Kraken is a direct dependent of: Roary/3.13.0-foss-2020a

Last modified on 10th November 2020