Deprecated: Use of this version of LEfSe is deprecated. More information on our Applications Support and Retention Policy.LEfSe (Linear discriminant analysis Effect Size) determines the features (organisms, clades, operational taxonomic units, genes, or functions) most likely to explain differences between classes by coupling standard tests for statistical significance with additional tests encoding biological consistency and effect relevance.
Accessing LEfSe 1.1-foss-2019b-Python-3.7.4
To load the module for LEfSe 1.1-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load LEfSe/1.1-foss-2019b-Python-3.7.4
BEAR Apps Version
For more information visit the LEfSe website.
This version of LEfSe has a direct dependency on: biom-format/2.1.8-foss-2019b-Python-3.7.4 foss/2019b matplotlib/3.1.1-foss-2019b-Python-3.7.4 Python/3.7.4-GCCcore-8.3.0 R/3.6.2-foss-2019b rpy2/3.2.6-foss-2019b-Python-3.7.4 SciPy-bundle/2019.10-foss-2019b-Python-3.7.4
Last modified on 25th September 2020