Deprecated: Use of this version of PHATE is deprecated. More information on our Applications Support and Retention Policy.PHATE (Potential of Heat-diffusion for Affinity-based Trajectory Embedding) is a tool for visualizing high dimensional single-cell data with natural progressions or trajectories. PHATE uses a novel conceptual framework for learning and visualizing the manifold inherent to biological systems in which smooth transitions mark the progressions of cells from one state to another.
Accessing PHATE 1.0.10-foss-2021b
To load the module for PHATE 1.0.10-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load PHATE/1.0.10-foss-2021b
BEAR Apps Version
- Deprecated 1.2.14
- graphtools 1.5.3
- phate 1.0.10
- PyGSP 0.5.1
- s_gd2 1.8.1
- scprep 1.2.2
- tasklogger 1.2.0
- wrapt 1.15.0
For more information visit the PHATE website.
This version of PHATE is a direct dependent of: phateR/1.0.7-foss-2021b-R-4.2.0
Last modified on 5th June 2023