Deprecated: Use of this version of PHATE is deprecated. More information on our Applications Support and Retention Policy.
There is a newer version of PHATEPHATE (Potential of Heat-diffusion for Affinity-based Trajectory Embedding) is a tool for visualizing high dimensional single-cell data with natural progressions or trajectories. PHATE uses a novel conceptual framework for learning and visualizing the manifold inherent to biological systems in which smooth transitions mark the progressions of cells from one state to another.
Accessing PHATE 1.0.7-foss-2020a-Python-3.8.2
To load the module for PHATE 1.0.7-foss-2020a-Python-3.8.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load PHATE/1.0.7-foss-2020a-Python-3.8.2
BEAR Apps Version
- Deprecated 1.2.11
- graphtools 1.5.2
- phate 1.0.7
- PyGSP 0.5.1
- scprep 1.0.13
- tasklogger 1.0.0
- wrapt 1.12.1
For more information visit the PHATE website.
This version of PHATE has a direct dependency on: foss/2020a matplotlib/3.2.1-foss-2020a-Python-3.8.2 Python/3.8.2-GCCcore-9.3.0 scikit-learn/0.23.2-foss-2020a-Python-3.8.2 SciPy-bundle/2020.03-foss-2020a-Python-3.8.2
This version of PHATE is a direct dependent of: phateR/1.0.7-foss-2020a-R-4.0.0-Python-3.8.2
These versions of PHATE are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 9th March 2021