PhyloPhlAn 3.0.2-foss-2021b
Deprecated: Use of this version of PhyloPhlAn is deprecated. More information on our Applications Support and Retention Policy.
PhyloPhlAn is an integrated pipeline for large-scale phylogenetic profiling of genomes and metagenomes. PhyloPhlAn is an accurate, rapid, and easy-to-use method for large-scale microbial genome characterization and phylogenetic analysis at multiple levels of resolution.Accessing PhyloPhlAn 3.0.2-foss-2021b
To load the module for PhyloPhlAn 3.0.2-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load PhyloPhlAn/3.0.2-foss-2021b
BEAR Apps Version
More Information
For more information visit the PhyloPhlAn website.
Dependencies
This version of PhyloPhlAn has a direct dependency on: Biopython/1.79-foss-2021b BLAST+/2.12.0-gompi-2021b DendroPy/4.5.2-GCCcore-11.2.0 DIAMOND/2.0.13-GCC-11.2.0 FastTree/2.1.11-GCCcore-11.2.0 foss/2021b IQ-TREE/2.2.1-gompi-2021b MAFFT/7.490-gompi-2021b-with-extensions matplotlib/3.4.3-foss-2021b MUSCLE/5.1-GCCcore-11.2.0 Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b Seaborn/0.11.2-foss-2021b SEPP/4.5.1-foss-2021b trimAl/1.4.1-GCCcore-11.2.0 USEARCH/11.0.667-i86linux32
Required By
This version of PhyloPhlAn is a direct dependent of: MetaPhlAn/3.0.14-foss-2021b
Last modified on 14th July 2022