PyEnsembl 2.0.1-foss-2021b

Deprecated: Use of this version of PyEnsembl is deprecated. More information on our Applications Support and Retention Policy.

Python interface to access reference genome features (such as genes, transcripts and exons) from Ensembl.

Accessing PyEnsembl 2.0.1-foss-2021b

To load the module for PyEnsembl 2.0.1-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load PyEnsembl/2.0.1-foss-2021b

BEAR Apps Version

2018b

Extensions

  • datacache 1.1.5
  • gtfparse 1.2.1
  • memoized-property-1.0.3
  • progressbar33 2.4
  • PyEnsembl 2.0.1
  • serializable 0.2.1
  • tinytimer 20150320
  • typechecks 0.1.0

More Information

For more information visit the PyEnsembl website.

Dependencies

This version of PyEnsembl has a direct dependency on: foss/2021b Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b

Required By

This version of PyEnsembl is a direct dependent of: Bisbee/20210108-foss-2021b-R-4.2.0

Last modified on 7th October 2022