BEAR Applications

Python 3.10.8-GCCcore-12.2.0

Deprecated: Use of this version of Python is deprecated. More information on our Applications Support and Retention Policy.

Python is a programming language that lets you work more quickly and integrate your systems more effectively.

Accessing Python 3.10.8-GCCcore-12.2.0

To load the module for Python 3.10.8-GCCcore-12.2.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load Python/3.10.8-GCCcore-12.2.0

BEAR Apps Version

2018b

Extensions

• alabaster 0.7.12
• appdirs 1.4.4
• asn1crypto 1.5.1
• atomicwrites 1.4.1
• attrs 22.1.0
• Babel 2.11.0
• backports.entry-points-selectable-1.2.0
• backports.functools_lru_cache 1.6.4
• bcrypt 4.0.1
• bitstring 3.1.9
• blist 1.3.6
• CacheControl 0.12.11
• cachy 0.3.0
• certifi 2022.9.24
• cffi 1.15.1
• chardet 5.0.0
• charset-normalizer-2.1.1
• cleo 1.0.0a5
• click 8.1.3
• clikit 0.6.2
• cloudpickle 2.2.0
• colorama 0.4.6
• commonmark 0.9.1
• crashtest 0.3.1
• cryptography 38.0.3
• Cython 0.29.32
• decorator 5.1.1
• distlib 0.3.6
• docopt 0.6.2
• docutils 0.19
• doit 0.36.0
• dulwich 0.20.50
• ecdsa 0.18.0
• editables 0.3
• exceptiongroup 1.0.1
• execnet 1.9.0
• filelock 3.8.0
• flit 3.8.0
• flit_core 3.8.0
• flit_scm 1.7.0
• fsspec 2022.11.0
• future 0.18.2
• glob2 0.7
• hatch_fancy_pypi_readme 22.8.0
• hatch_vcs 0.2.0
• hatchling 1.11.1
• html5lib 1.1
• idna 3.4
• imagesize 1.4.1
• importlib_metadata 5.0.0
• importlib_resources 5.10.0
• iniconfig 1.1.1
• intervaltree 3.1.0
• intreehooks 1.0
• ipaddress 1.0.23
• jaraco.classes 3.2.3
• jeepney 0.8.0
• Jinja2 3.1.2
• joblib 1.2.0
• jsonschema 4.17.0
• keyring 23.11.0
• keyrings.alt 4.2.0
• liac-arff-2.5.0
• lockfile 0.12.2
• MarkupSafe 2.1.1
• mock 4.0.3
• more-itertools-9.0.0
• msgpack 1.0.4
• netaddr 0.8.0
• netifaces 0.11.0
• packaging 21.3
• paramiko 2.12.0
• pastel 0.2.1
• pathlib2 2.3.7.post1
• pathspec 0.10.1
• pbr 5.11.0
• pexpect 4.8.0
• pip 22.3.1
• pkginfo 1.8.3
• platformdirs 2.5.3
• pluggy 1.0.0
• poetry 1.2.2
• poetry-core-1.3.2
• poetry_plugin_export 1.2.0
• pooch 1.6.0
• psutil 5.9.4
• ptyprocess 0.7.0
• py 1.11.0
• py_expression_eval 0.3.14
• pyasn1 0.4.8
• pycparser 2.21
• pycryptodome 3.17
• pydevtool 0.3.0
• Pygments 2.13.0
• pylev 1.4.0
• PyNaCl 1.5.0
• pyparsing 3.0.9
• pyrsistent 0.19.2
• pytest 7.2.0
• pytest-xdist-3.1.0
• python-dateutil-2.8.2
• pytoml 0.1.21
• pytz 2022.6
• regex 2022.10.31
• requests 2.28.1
• requests-toolbelt-0.9.1
• rich 13.1.0
• rich-click-1.6.0
• scandir 1.10.0
• SecretStorage 3.3.3
• semantic_version 2.10.0
• setuptools 63.4.3
• setuptools-rust-1.5.2
• setuptools_scm 7.0.5
• shellingham 1.5.0
• simplegeneric 0.8.1
• simplejson 3.17.6
• six 1.16.0
• snowballstemmer 2.2.0
• sortedcontainers 2.4.0
• Sphinx 5.3.0
• sphinx-bootstrap-theme-0.8.1
• sphinxcontrib-applehelp-1.0.2
• sphinxcontrib-devhelp-1.0.2
• sphinxcontrib-htmlhelp-2.0.0
• sphinxcontrib-jsmath-1.0.1
• sphinxcontrib-qthelp-1.0.3
• sphinxcontrib-serializinghtml-1.1.5
• sphinxcontrib-websupport-1.2.4
• tabulate 0.9.0
• threadpoolctl 3.1.0
• toml 0.10.2
• tomli 2.0.1
• tomli_w 1.0.0
• tomlkit 0.11.6
• typing_extensions 4.4.0
• ujson 5.5.0
• urllib3 1.26.12
• virtualenv 20.16.6
• wcwidth 0.2.5
• webencodings 0.5.1
• wheel 0.38.4
• xlrd 2.0.1
• zipfile36 0.1.3
• zipp 3.10.0

More Information

For more information visit the Python website.

Dependencies

This version of Python has a direct dependency on: binutils/2.39-GCCcore-12.2.0 bzip2/1.0.8-GCCcore-12.2.0 GCCcore/12.2.0 GMP/6.2.1-GCCcore-12.2.0 libffi/3.4.4-GCCcore-12.2.0 libreadline/8.2-GCCcore-12.2.0 ncurses/6.3-GCCcore-12.2.0 OpenSSL/1.1 SQLite/3.39.4-GCCcore-12.2.0 XZ/5.2.7-GCCcore-12.2.0 zlib/1.2.12-GCCcore-12.2.0

Required By

This version of Python is a direct dependent of: ALAMODE/1.4.2-foss-2022b Arrow/11.0.0-gfbf-2022b autograd/1.6.3-foss-2022b BEAR-Python-MSc-Bioinformatics/2022b-foss-2022b BeautifulSoup/4.11.1-GCCcore-12.2.0 Biopython/1.81-foss-2022b BioServices/1.11.2-foss-2022b bokeh/3.2.1-foss-2022b Boost.Python/1.81.0-GCC-12.2.0 cma/3.3.0-foss-2022b coexist/0.3.2-foss-2022b cppy/1.2.1-GCCcore-12.2.0 cutadapt/4.4-GCCcore-12.2.0 dask/2023.7.1-foss-2022b dcm2bids/3.1.1-foss-2022b expecttest/0.1.3-GCCcore-12.2.0 GATK/4.4.0.0-GCCcore-12.2.0-Java-17 GDAL/3.6.2-foss-2022b GObject-Introspection/1.74.0-GCCcore-12.2.0 gprofiler-official/1.0.0-foss-2022b graphviz/0.20.1-foss-2022b Graphviz/8.1.0-GCCcore-12.2.0 GStreamer/1.22.1-GCCcore-12.2.0 h5py/3.8.0-foss-2022b hypothesis/6.68.2-GCCcore-12.2.0 imageio/2.31.1-foss-2022b intermine/1.13.0-GCCcore-12.2.0 IPython/8.14.0-GCCcore-12.2.0 IRkernel/1.3.2-foss-2022b-R-4.3.1 JupyterLab/4.0.3-GCCcore-12.2.0 jupyter-server/2.7.0-GCCcore-12.2.0 kinbot/2.2.1-foss-2022b lxml/4.9.2-GCCcore-12.2.0 Mako/1.2.4-GCCcore-12.2.0 matplotlib/3.7.0-gfbf-2022b maturin/1.1.0-GCCcore-12.2.0 Meep/1.28.0-foss-2022b Meson/0.64.0-GCCcore-12.2.0 meson-python/0.11.0-GCCcore-12.2.0 mlxtend/0.22.0-gfbf-2022b mofapy2/0.7.0-foss-2022b MPB/1.11.1-foss-2022b mpi4py/3.1.4-gompi-2022b mvlearn/0.5.0-foss-2022b networkx/3.0-gfbf-2022b NLopt/2.7.1-foss-2022b-Python NLTK/3.8.1-foss-2022b OpenBabel/3.1.1-gompi-2022b OpenCV/4.8.0-foss-2022b-contrib pept/0.5.1-foss-2022b PICI-LIGGGHTS/3.8.1-foss-2022b Pillow/9.4.0-GCCcore-12.2.0 pkgconfig/1.5.5-GCCcore-12.2.0-python plotly.py/5.13.1-GCCcore-12.2.0 polars/0.19.12-foss-2022b protobuf-python/4.23.0-GCCcore-12.2.0 pybind11/2.10.3-GCCcore-12.2.0 PyCairo/1.24.0-GCCcore-12.2.0 PyGObject/3.44.1-GCCcore-12.2.0 pyhpo/3.2.2-gfbf-2022b pytest-rerunfailures/12.0-GCCcore-12.2.0 pytest-shard/0.1.2-GCCcore-12.2.0 python-isal/1.1.0-GCCcore-12.2.0 PyTorch/1.13.1-foss-2022b pyvis/0.3.1-foss-2022b pyvista/0.41.1-foss-2022b PyYAML/6.0-GCCcore-12.2.0 RDKit/2023.03.3-foss-2022b scikit-image/0.21.0-foss-2022b scikit-learn/1.2.1-gfbf-2022b scikit-plot/0.3.7-foss-2022b SciPy-bundle/2023.02-gfbf-2022b Seaborn/0.12.2-foss-2022b sequenza-utils/3.0.0-foss-2022b setuptools/64.0.3-GCCcore-12.2.0 ShortStack/4.0.2-foss-2022b ShortTracks/1.1-foss-2022b SignalP/6.0h-foss-2022b-fast statsmodels/0.14.0-gfbf-2022b Tkinter/3.10.8-GCCcore-12.2.0 tqdm/4.64.1-GCCcore-12.2.0 Trilinos/14.4.0-foss-2022b ViennaRNA/2.6.4-foss-2022b VTK/9.2.6-foss-2022b wittgenstein/0.3.4-foss-2022b

Other Versions

These versions of Python are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 14th July 2023