BEAR Applications: SAMtools 1.11-GCC-10.2.0 (for BlueBEAR, BEARCloud VMs, and CaStLeS VMs)

SAMtools 1.11-GCC-10.2.0

Deprecated: Use of this version of SAMtools is deprecated. More information on our Applications Support and Retention Policy.

There is a newer version of SAMtools

SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.

Accessing SAMtools 1.11-GCC-10.2.0

To load the module for SAMtools 1.11-GCC-10.2.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load SAMtools/1.11-GCC-10.2.0

BEAR Apps Version

2018b

More Information

For more information visit the SAMtools website.

Dependencies

This version of SAMtools has a direct dependency on: bzip2/1.0.8-GCCcore-10.2.0 cURL/7.72.0-GCCcore-10.2.0 GCC/10.2.0 ncurses/6.2-GCCcore-10.2.0 XZ/5.2.5-GCCcore-10.2.0 zlib/1.2.11-GCCcore-10.2.0

Required By

This version of SAMtools is a direct dependent of: bwa-mem2-meth/0.2.2-GCC-10.2.0 rMATS-turbo/4.1.1-foss-2020b

Other Versions

These versions of SAMtools are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
1.17-GCC-12.2.0	2022b
1.15.1-GCC-11.2.0	2021b
1.12-GCC-10.3.0	2021a
1.10-GCC-9.3.0	2020a
1.10-GCC-8.3.0	2019b
0.1.19-GCC-10.3.0	2021a
1.9-GCC-8.2.0-2.31.1	2019a
1.9-foss-2018b	2018b
0.1.20-foss-2018b	2018b
0.1.18-foss-2018b	2018b

Last modified on 14th June 2022