Deprecated: Use of this version of SortMeRNA is deprecated. More information on our Applications Support and Retention Policy.SortMeRNA is a local sequence alignment tool for filtering, mapping and clustering. The core algorithm is based on approximate seeds and allows for sensitive analysis of NGS reads. The main application of SortMeRNA is filtering rRNA from metatranscriptomic data. SortMeRNA takes as input files of reads (fasta, fastq, fasta.gz, fastq.gz) and one or multiple rRNA database file(s), and sorts apart aligned and rejected reads into two files. SortMeRNA works with Illumina, Ion Torrent and PacBio data, and can produce SAM and BLAST-like alignments.
Accessing SortMeRNA 4.3.6-foss-2021b
To load the module for SortMeRNA 4.3.6-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load SortMeRNA/4.3.6-foss-2021b
BEAR Apps Version
For more information visit the SortMeRNA website.
This version of SortMeRNA has a direct dependency on: ConcurrentQueue/1.0.3-GCCcore-11.2.0 foss/2021b RapidJSON/1.1.0-GCCcore-11.2.0 RocksDB/7.9.2-GCCcore-11.2.0 zlib/1.2.11-GCCcore-11.2.0
Last modified on 16th February 2023