Deprecated: Use of this version of SpaTalk is deprecated. More information on our Applications Support and Retention Policy.A spatially resolved cell-cell communication inference method relying on the graph network and knowledge graph to model ligand-receptor-target signaling network between the spatially proximal cells, which were decomposed from the ST data through the non-negative linear model and spatial mapping between single-cell RNA-seq and ST data. SpaTalk is a reliable method that can help scientists uncover the spatially resolved cell-cell communications for either single-cell or spot-based ST data universally, providing new insights into the understanding of spatial cellular dynamics in tissues.
Accessing SpaTalk 1.0-foss-2021b-R-4.2.0
To load the module for SpaTalk 1.0-foss-2021b-R-4.2.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load SpaTalk/1.0-foss-2021b-R-4.2.0
BEAR Apps Version
- ggalluvial 0.12.3
- ggfun 0.0.6
- NNLM 0.4.3
- scatterpie 0.1.7
- SpaTalk 1.0
For more information visit the SpaTalk website.
This version of SpaTalk is a direct dependent of: BEAR-R-bio/2021b-foss-2021b-R-4.2.0
Last modified on 11th August 2022