Deprecated: Use of this version of SplAdder is deprecated. More information on our Applications Support and Retention Policy.Splicing Adder is a toolbox for alternative splicing analysis based on RNA-Seq alignment data. Briefly, the software takes a given annotation and RNA-Seq read alignments in standardized formats, transforms the annotation into a splicing graph representation, augments the splicing graph with additional information extracted from the read data, extracts alternative splicing events from the graph and quantifies the events based on the alignment data.
Accessing SplAdder 3.0.3-foss-2021b
To load the module for SplAdder 3.0.3-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load SplAdder/3.0.3-foss-2021b
BEAR Apps Version
For more information visit the SplAdder website.
This version of SplAdder has a direct dependency on: foss/2021b h5py/3.6.0-foss-2021b matplotlib/3.4.3-foss-2021b numba/0.54.1-foss-2021b Pysam/0.18.0-GCC-11.2.0 Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b statsmodels/0.13.1-foss-2021b
This version of SplAdder is a direct dependent of: Bisbee/20210108-foss-2021b-R-4.2.0
Last modified on 7th October 2022