TALON 20230209-foss-2021b

Deprecated: Use of this version of TALON is deprecated. More information on our Applications Support and Retention Policy.

TALON is a Python package for identifying and quantifying known and novel genes/isoforms in long-read transcriptome data sets. TALON is technology-agnostic in that it works from mapped SAM files, allowing data from different sequencing platforms (i.e. PacBio and Oxford Nanopore) to be analyzed side by side.

Accessing TALON 20230209-foss-2021b

To load the module for TALON 20230209-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load TALON/20230209-foss-2021b

BEAR Apps Version

2018b

Extensions

  • bamread 0.0.11
  • ncls 0.0.66
  • pyranges 0.0.120
  • pyrle 0.0.35
  • sorted_nearest 0.0.38
  • TALON 20230209

More Information

For more information visit the TALON website.

Dependencies

This version of TALON has a direct dependency on: BEDTools/2.30.0-GCC-11.2.0 foss/2021b pybedtools/0.8.2-GCC-11.2.0 pyfaidx/0.7.0-GCCcore-11.2.0 Pysam/0.17.0-GCC-11.2.0 Python/3.9.6-GCCcore-11.2.0 scanpy/1.9.1-foss-2021b SciPy-bundle/2021.10-foss-2021b

Last modified on 10th February 2023