Deprecated: Use of this version of TALON is deprecated. More information on our Applications Support and Retention Policy.TALON is a Python package for identifying and quantifying known and novel genes/isoforms in long-read transcriptome data sets. TALON is technology-agnostic in that it works from mapped SAM files, allowing data from different sequencing platforms (i.e. PacBio and Oxford Nanopore) to be analyzed side by side.
Accessing TALON 20230209-foss-2021b
To load the module for TALON 20230209-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load TALON/20230209-foss-2021b
BEAR Apps Version
- bamread 0.0.11
- ncls 0.0.66
- pyranges 0.0.120
- pyrle 0.0.35
- sorted_nearest 0.0.38
- TALON 20230209
For more information visit the TALON website.
This version of TALON has a direct dependency on: BEDTools/2.30.0-GCC-11.2.0 foss/2021b pybedtools/0.8.2-GCC-11.2.0 pyfaidx/0.7.0-GCCcore-11.2.0 Pysam/0.17.0-GCC-11.2.0 Python/3.9.6-GCCcore-11.2.0 scanpy/1.9.1-foss-2021b SciPy-bundle/2021.10-foss-2021b
Last modified on 10th February 2023