Deprecated: Use of this version of TraCeR is deprecated. More information on our Applications Support and Retention Policy.TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
Accessing TraCeR 0.6.0-foss-2018b-Python-3.6.6
To load the module for TraCeR 0.6.0-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load TraCeR/0.6.0-foss-2018b-Python-3.6.6
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- networkx 1.11
- prettytable 0.7.2
- pydotplus 2.0.2
- TraCeR 0.6.0
For more information visit the TraCeR website.
This version of TraCeR has a direct dependency on: Biopython/1.72-foss-2018b-Python-3.6.6 BLAST+/2.8.1-foss-2018b Bowtie2/220.127.116.11-foss-2018b foss/2018b future/0.16.0-foss-2018b-Python-3.6.6 Graphviz/2.40.1-foss-2018b IgBlast/1.14.0-foss-2018b Jellyfish/2.2.10-foss-2018b kallisto/0.45.0-foss-2018b Python/3.6.6-foss-2018b Salmon/0.12.0-foss-2018b SAMtools/1.9-foss-2018b Seaborn/0.9.0-foss-2018b-Python-3.6.6 Trinity/2.8.4-foss-2018b
Last modified on 11th July 2019