TransDecoder 5.5.0-foss-2019b-Perl-5.30.0

Deprecated: Use of this version of TransDecoder is deprecated. More information on our Applications Support and Retention Policy.

TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.

Accessing TransDecoder 5.5.0-foss-2019b-Perl-5.30.0

To load the module for TransDecoder 5.5.0-foss-2019b-Perl-5.30.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load TransDecoder/5.5.0-foss-2019b-Perl-5.30.0

BEAR Apps Version

2018b

More Information

For more information visit the TransDecoder website.

Dependencies

This version of TransDecoder has a direct dependency on: CD-HIT/4.8.1-GCC-8.3.0 foss/2019b Perl/5.30.0-GCCcore-8.3.0

Last modified on 24th August 2022