Trim_Galore 0.6.5-GCCcore-8.3.0-Java-11-Python-3.7.4

Deprecated: Use of this version of Trim_Galore is deprecated. More information on our Applications Support and Retention Policy.

Trim Galore is a wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data.

Accessing Trim_Galore 0.6.5-GCCcore-8.3.0-Java-11-Python-3.7.4

To load the module for Trim_Galore 0.6.5-GCCcore-8.3.0-Java-11-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Trim_Galore/0.6.5-GCCcore-8.3.0-Java-11-Python-3.7.4

BEAR Apps Version

2018b

More Information

For more information visit the Trim_Galore website.

Dependencies

This version of Trim_Galore has a direct dependency on: cutadapt/2.7-GCCcore-8.3.0-Python-3.7.4 FastQC/0.11.9-Java-11 GCCcore/8.3.0 Java/11 Perl/5.30.0-GCCcore-8.3.0 pigz/2.4-GCCcore-8.3.0 Python/3.7.4-GCCcore-8.3.0

Last modified on 17th June 2020