amplimap 0.4.5-foss-2018b-Python-3.6.6

Deprecated: Use of this version of amplimap is deprecated. More information on our Applications Support and Retention Policy.

There is a newer install of amplimap

amplimap is a command-line tool to automate the processing and analysis of data from targeted next-generation sequencing (NGS) experiments with PCR-based amplicons or capture-based enrichment systems.

Accessing amplimap 0.4.5-foss-2018b-Python-3.6.6

To load the module for amplimap 0.4.5-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load amplimap/0.4.5-foss-2018b-Python-3.6.6

BEAR Apps Version

2018b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

  • amplimap 0.4.5
  • appdirs 1.4.3
  • attrs 18.2.0
  • ConfigArgParse 0.14.0
  • Cycler 0.10.0
  • datrie 0.7.1
  • Distance 0.1.3
  • docutils 0.14
  • future 0.17.1
  • gitdb2 2.0.5
  • GitPython 2.1.11
  • interlap 0.2.6
  • jsonschema 3.0.0b3
  • kiwisolver 1.0.1
  • matplotlib 3.0.2
  • numpy 1.15.4
  • pyfaidx 0.5.5.2
  • pyrsistent 0.14.0
  • ratelimiter 1.2.0.post0
  • regex 2019.01.24
  • setuptools_scm 3.2.0
  • smmap2 2.0.5
  • snakemake 5.3.0
  • umi_tools 0.5.5
  • wrapt 1.11.1

More Information

For more information visit the amplimap website.

Dependencies

This version of amplimap has a direct dependency on: Biopython/1.72-foss-2018b-Python-3.6.6 foss/2018b freetype/2.9.1-GCCcore-7.3.0 libpng/1.6.34-GCCcore-7.3.0 Pysam/0.15.1-foss-2018b-Python-3.6.6 Python/3.6.6-foss-2018b PyYAML/3.13-foss-2018b-Python-3.6.6 Tkinter/3.6.6-foss-2018b-Python-3.6.6

Other Versions

These versions of amplimap are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
0.4.16-foss-2018b-Python-3.6.6 2018b

Last modified on 3rd June 2019