Deprecated: Use of this version of ariba is deprecated. More information on our Applications Support and Retention Policy.ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. It can also be used for MLST calling.
Accessing ariba 2.13.5-foss-2018b-Python-3.6.6
To load the module for ariba 2.13.5-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load ariba/2.13.5-foss-2018b-Python-3.6.6
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- ariba 2.13.5
- beautifulsoup4 4.7.1
- pyfastaq 3.17.0
- pymummer 0.10.3
- soupsieve 1.9.1
For more information visit the ariba website.
This version of ariba has a direct dependency on: Biopython/1.72-foss-2018b-Python-3.6.6 Bowtie2/220.127.116.11-foss-2018b CD-HIT/4.8.1-foss-2018b DendroPy/4.4.0-foss-2018b-Python-3.6.6 foss/2018b matplotlib/3.0.0-foss-2018b-Python-3.6.6 MUMmer/4.0.0beta2-foss-2018b Pysam/0.15.1-foss-2018b-Python-3.6.6 Python/3.6.6-foss-2018b
Last modified on 3rd June 2019