ariba 2.13.5-foss-2018b-Python-3.6.6

Deprecated: Use of this version of ariba is deprecated. More information on our Applications Support and Retention Policy.

ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. It can also be used for MLST calling.

Accessing ariba 2.13.5-foss-2018b-Python-3.6.6

To load the module for ariba 2.13.5-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load ariba/2.13.5-foss-2018b-Python-3.6.6

BEAR Apps Version

2018b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• ariba 2.13.5
• beautifulsoup4 4.7.1
• pyfastaq 3.17.0
• pymummer 0.10.3
• soupsieve 1.9.1

More Information

For more information visit the ariba website.

Dependencies

This version of ariba has a direct dependency on: Biopython/1.72-foss-2018b-Python-3.6.6 Bowtie2/2.3.4.2-foss-2018b CD-HIT/4.8.1-foss-2018b DendroPy/4.4.0-foss-2018b-Python-3.6.6 foss/2018b matplotlib/3.0.0-foss-2018b-Python-3.6.6 MUMmer/4.0.0beta2-foss-2018b Pysam/0.15.1-foss-2018b-Python-3.6.6 Python/3.6.6-foss-2018b

Last modified on 3rd June 2019