BEAR Applications

biom-format 2.1.12-foss-2021b

Deprecated: Use of this version of biom-format is deprecated. More information on our Applications Support and Retention Policy.

The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium supported project.

Accessing biom-format 2.1.12-foss-2021b

To load the module for biom-format 2.1.12-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load biom-format/2.1.12-foss-2021b

BEAR Apps Version

2018b

More Information

For more information visit the biom-format website.

Dependencies

This version of biom-format has a direct dependency on: foss/2021b h5py/3.6.0-foss-2021b Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b

Required By

This version of biom-format is a direct dependent of: CMSeq/1.0.4-foss-2021b MetaPhlAn/3.0.14-foss-2021b

Other Versions

These versions of biom-format are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 14th July 2022