canu 1.9-GCCcore-8.3.0-Perl-5.30.0

Deprecated: Use of this version of canu is deprecated. More information on our Applications Support and Retention Policy.

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION). Canu is a hierarchical assembly pipeline which runs in four steps: Detect overlaps in high-noise sequences using MHAP Generate corrected sequence consensus Trim corrected sequences Assemble trimmed corrected sequences

Accessing canu 1.9-GCCcore-8.3.0-Perl-5.30.0

To load the module for canu 1.9-GCCcore-8.3.0-Perl-5.30.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load canu/1.9-GCCcore-8.3.0-Perl-5.30.0

BEAR Apps Version

2018b

More Information

For more information visit the canu website.

Dependencies

This version of canu has a direct dependency on: GCCcore/8.3.0 gnuplot/5.2.8-GCCcore-8.3.0 Java/11 Perl/5.30.0-GCCcore-8.3.0

Last modified on 23rd January 2020