cellphonedb 2.1.1-foss-2019b-Python-3.7.4-R-3.6.2
Deprecated: Use of this version of cellphonedb is deprecated. More information on our Applications Support and Retention Policy.
CellPhoneDB is a publicly available repository of curated receptors, ligands and its interactions. Subunit architecture is included for both ligands and receptors, representing heteromeric complexes accurately.Accessing cellphonedb 2.1.1-foss-2019b-Python-3.7.4-R-3.6.2
To load the module for cellphonedb 2.1.1-foss-2019b-Python-3.7.4-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load cellphonedb/2.1.1-foss-2019b-Python-3.7.4-R-3.6.2
BEAR Apps Version
Extensions
- aniso8601 4.0.0
- boto3 1.7.84
- botocore 1.10.84
- cellphonedb 2.1.1
- click 6.7
- docutils 0.14
- fbpca 1.0
- Flask 1.0
- Flask-RESTful-0.3.6
- Flask-Testing-0.7.0
- geosketch 0.3
- idna 2.5
- itsdangerous 1.1.0
- Jinja2 2.10.3
- jmespath 0.9.4
- MarkupSafe 1.1.1
- pandas 0.23.0
- pika 0.12.0
- requests 2.19.1
- rpy2 3.0.4
- s3transfer 0.1.13
- simplegeneric 0.8.1
- SQLAlchemy 1.3.13
- tqdm 4.32.0
- urllib3 1.21.1
- Werkzeug 0.16.0
More Information
For more information visit the cellphonedb website.
Dependencies
This version of cellphonedb has a direct dependency on: foss/2019b Python/3.7.4-GCCcore-8.3.0 PyYAML/5.1.2-GCCcore-8.3.0 R/3.6.2-foss-2019b scikit-learn/0.21.3-foss-2019b-Python-3.7.4 SciPy-bundle/2019.10-foss-2019b-Python-3.7.4
Other Versions
These versions of cellphonedb are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Version | BEAR Apps Version |
---|---|
1.1.0-foss-2018b-Python-3.6.6 | 2018b |
Last modified on 5th March 2020