fastStructure 1.0-foss-2020a-Python-2.7.18

Deprecated: Use of this version of fastStructure is deprecated. More information on our Applications Support and Retention Policy.

fastStructure is a fast algorithm for inferring population structure from large SNP genotype data. It is based on a variational Bayesian framework for posterior inference and is written in Python2.x.

Accessing fastStructure 1.0-foss-2020a-Python-2.7.18

To load the module for fastStructure 1.0-foss-2020a-Python-2.7.18 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load fastStructure/1.0-foss-2020a-Python-2.7.18

BEAR Apps Version

2018b

More Information

For more information visit the fastStructure website.

Dependencies

This version of fastStructure has a direct dependency on: foss/2020a GSL/2.6-GCC-9.3.0 matplotlib/2.2.5-foss-2020a-Python-2.7.18 Python/2.7.18-GCCcore-9.3.0 SciPy-bundle/2020.03-foss-2020a-Python-2.7.18

Last modified on 17th June 2022