monocle 2.24.1-foss-2021b-R-4.2.0

Deprecated: Use of this version of monocle is deprecated. More information on our Applications Support and Retention Policy.

The monocle package provides a toolkit for analyzing single cell gene expression experiments. This vignette provides an overview of a single cell RNA-Seq analysis workflow with Monocle

Accessing monocle 2.24.1-foss-2021b-R-4.2.0

To load the module for monocle 2.24.1-foss-2021b-R-4.2.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load monocle/2.24.1-foss-2021b-R-4.2.0

BEAR Apps Version

2018b

Extensions

  • biocViews 1.64.1
  • DDRTree 0.1.5
  • HSMMSingleCell 1.16.0
  • leidenbase 0.1.11
  • monocle 2.24.1

More Information

For more information visit the monocle website.

Dependencies

This version of monocle has a direct dependency on: foss/2021b R/4.2.0-foss-2021b R-bundle-Bioconductor/3.15-foss-2021b-R-4.2.0

Required By

This version of monocle is a direct dependent of: BEAR-R-bio/2021b-foss-2021b-R-4.2.0

Last modified on 5th August 2022