Deprecated: Use of this version of phateR is deprecated. More information on our Applications Support and Retention Policy.
There is a newer version of phateRPHATE (Potential of Heat-diffusion for Affinity-based Trajectory Embedding) is a tool for visualizing high dimensional single-cell data with natural progressions or trajectories. PHATE uses a novel conceptual framework for learning and visualizing the manifold inherent to biological systems in which smooth transitions mark the progressions of cells from one state to another.
Accessing phateR 1.0.7-foss-2020a-R-4.0.0-Python-3.8.2
To load the module for phateR 1.0.7-foss-2020a-R-4.0.0-Python-3.8.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load phateR/1.0.7-foss-2020a-R-4.0.0-Python-3.8.2
BEAR Apps Version
- phateR 1.0.7
For more information visit the phateR website.
This version of phateR has a direct dependency on: foss/2020a PHATE/1.0.7-foss-2020a-Python-3.8.2 Python/3.8.2-GCCcore-9.3.0 R/4.0.0-foss-2020a
This version of phateR is a direct dependent of: BEAR-R-bio/2020a-foss-2020a-R-4.0.0
These versions of phateR are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 9th March 2021