BEAR Applications

phateR 1.0.7-foss-2021b-R-4.2.0

Deprecated: Use of this version of phateR is deprecated. More information on our Applications Support and Retention Policy.

PHATE (Potential of Heat-diffusion for Affinity-based Trajectory Embedding) is a tool for visualizing high dimensional single-cell data with natural progressions or trajectories. PHATE uses a novel conceptual framework for learning and visualizing the manifold inherent to biological systems in which smooth transitions mark the progressions of cells from one state to another.

Accessing phateR 1.0.7-foss-2021b-R-4.2.0

To load the module for phateR 1.0.7-foss-2021b-R-4.2.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load phateR/1.0.7-foss-2021b-R-4.2.0

BEAR Apps Version

2018b

Extensions

• phateR 1.0.7

More Information

For more information visit the phateR website.

Dependencies

This version of phateR has a direct dependency on: foss/2021b PHATE/1.0.10-foss-2021b Python/3.9.6-GCCcore-11.2.0 R/4.2.0-foss-2021b

Required By

This version of phateR is a direct dependent of: BEAR-R-bio/2021b-foss-2021b-R-4.2.0 BEAR-R-bio/2021b-MSc-foss-2021b-R-4.2.0

Other Versions

These versions of phateR are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 5th June 2023