pyDNase 0.3.0-foss-2019b-Python-3.7.4

Deprecated: Use of this version of pyDNase is deprecated. More information on our Applications Support and Retention Policy.

pyDNase is a suite of tools for analysing DNase-seq data - pyDNase comes with several analysis scripts covering several common use cases of DNase-seq analysis, and also an implementation of the Wellington, Wellington 1D, and Wellington-boostrap footprinting algorithms.

Accessing pyDNase 0.3.0-foss-2019b-Python-3.7.4

To load the module for pyDNase 0.3.0-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load pyDNase/0.3.0-foss-2019b-Python-3.7.4

BEAR Apps Version

2018b

Extensions

  • args 0.1.0
  • clint 0.5.1
  • Cycler 0.10.0
  • matplotlib 1.5.3
  • pyDNase 0.3.0

More Information

For more information visit the pyDNase website.

Dependencies

This version of pyDNase has a direct dependency on: foss/2019b freetype/2.10.1-GCCcore-8.3.0 libpng/1.6.37-GCCcore-8.3.0 Pysam/0.15.3-GCC-8.3.0 Python/3.7.4-GCCcore-8.3.0 SciPy-bundle/2019.10-foss-2019b-Python-3.7.4 Tkinter/3.7.4-GCCcore-8.3.0

Last modified on 4th November 2020