BEAR Applications

pybedtools 0.8.0-foss-2019a

Deprecated: Use of this version of pybedtools is deprecated. More information on our Applications Support and Retention Policy.

There is a newer version of pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

Accessing pybedtools 0.8.0-foss-2019a

To load the module for pybedtools 0.8.0-foss-2019a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load pybedtools/0.8.0-foss-2019a

BEAR Apps Version

2018b

More Information

For more information visit the pybedtools website.

Dependencies

This version of pybedtools has a direct dependency on: BEDTools/2.28.0-GCC-8.2.0-2.31.1 foss/2019a Pysam/0.15.2-foss-2019a Python/2.7.15-GCCcore-8.2.0 Python/3.7.2-GCCcore-8.2.0

This version of pybedtools is compatible with multiple vesions of Python. At any time, only one of the versions of Python can be active and the desired version of Python should be loaded before loading this version of pybedtools.

Required By

This version of pybedtools is a direct dependent of: ALFA/1.1.1-foss-2019a-Python-3.7.2 MMSplice/1.0.3-foss-2019a-Python-3.7.2

Other Versions

These versions of pybedtools are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 11th October 2019