Deprecated: Use of this version of pycoQC is deprecated. More information on our Applications Support and Retention Policy.

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy).

Accessing pycoQC

To load the module for pycoQC please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load pycoQC/

BEAR Apps Version



  • pycoQC

More Information

For more information visit the pycoQC website.


This version of pycoQC has a direct dependency on: foss/2019b h5py/2.10.0-foss-2019b-Python-3.7.4 Pysam/0.15.3-GCC-8.3.0 Python/3.7.4-GCCcore-8.3.0 SciPy-bundle/2019.10-foss-2019b-Python-3.7.4 tqdm/4.41.1-GCCcore-8.3.0

Last modified on 6th July 2020