scanpy 1.9.1-foss-2022a
Deprecated: Use of this version of scanpy is deprecated. More information on our Applications Support and Retention Policy.
Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.Accessing scanpy 1.9.1-foss-2022a
To load the module for scanpy 1.9.1-foss-2022a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load scanpy/1.9.1-foss-2022a
BEAR Apps Version
Extensions
- anndata 0.8.0
- natsort 8.2.0
- scanpy 1.9.1
- session_info 1.0.0
- sinfo 0.3.4
- stdlib-list-0.8.0
- xlrd 2.0.1
More Information
For more information visit the scanpy website.
Dependencies
This version of scanpy has a direct dependency on: foss/2022a h5py/3.7.0-foss-2022a leidenalg/0.9.1-foss-2022a networkx/2.8.4-foss-2022a numba/0.56.4-foss-2022a PyTables/3.8.0-foss-2022a Python/3.10.4-GCCcore-11.3.0 scikit-learn/1.1.2-foss-2022a SciPy-bundle/2022.05-foss-2022a Seaborn/0.12.1-foss-2022a statsmodels/0.13.1-foss-2022a tqdm/4.64.0-GCCcore-11.3.0 umap-learn/0.5.3-foss-2022a
Required By
This version of scanpy is a direct dependent of: cell2location/0.1.3-foss-2022a-CUDA-11.7.0 cell2location/0.1.3-foss-2022a scvi-tools/0.20.1-foss-2022a-CUDA-11.7.0 scvi-tools/0.20.1-foss-2022a
Other Versions
These versions of scanpy are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Version | BEAR Apps Version |
---|---|
1.9.1-foss-2021b | 2021b |
1.8.2-foss-2021b | 2021b |
1.8.1-foss-2021a | 2021a |
Last modified on 27th February 2023