Deprecated: Use of this version of sequenza-utils is deprecated. More information on our Applications Support and Retention Policy.Sequenza-utils is The supporting python library for the sequenza R package. Sequenza is a software for the estimation and quantification of purity/ploidy and copy number alteration in sequencing experiments of tumor samples. Sequenza-utils provide command lines programs to transform common NGS file format - such as BAM, pileup and VCF - to input files for the R package.
Accessing sequenza-utils 3.0.0-foss-2021b
To load the module for sequenza-utils 3.0.0-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load sequenza-utils/3.0.0-foss-2021b
BEAR Apps Version
For more information visit the sequenza-utils website.
This version of sequenza-utils has a direct dependency on: foss/2021b HTSlib/1.14-GCC-11.2.0 Python/3.9.6-GCCcore-11.2.0 R/4.2.0-foss-2021b SAMtools/1.15.1-GCC-11.2.0 sequenza/3.0.0-foss-2021b
This version of sequenza-utils is a direct dependent of: BEAR-Python-MSc-Bioinformatics/2021b-foss-2021b
These versions of sequenza-utils are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 10th August 2022