tombo 7473afe-foss-2019b-Python-3.7.4-cowplot

Deprecated: Use of this version of tombo is deprecated. More information on our Applications Support and Retention Policy.

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

Accessing tombo 7473afe-foss-2019b-Python-3.7.4-cowplot

To load the module for tombo 7473afe-foss-2019b-Python-3.7.4-cowplot please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load tombo/7473afe-foss-2019b-Python-3.7.4-cowplot

BEAR Apps Version

2018b

Plotting Uses Cowplot

This version of tombo is set to use cowplot for plotting in the plotMotifStats.R script.

More Information

For more information visit the tombo website.

Dependencies

This version of tombo has a direct dependency on: foss/2019b h5py/2.10.0-foss-2019b-Python-3.7.4 mappy/2.17-foss-2019b-Python-3.7.4 Python/3.7.4-GCCcore-8.3.0 R/3.6.2-foss-2019b rpy2/3.2.6-foss-2019b-Python-3.7.4 tqdm/4.41.1-GCCcore-8.3.0

Other Versions

These versions of tombo are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 14th August 2020