Deprecated: Use of this version of transIndel is deprecated. More information on our Applications Support and Retention Policy.
There is a newer version of transIndeltransIndel is used to detect indels (insertions and deletions) from DNA-seq or RNA-seq data by parsing chimiric alignments from BWA-MEM.
Accessing transIndel 7098bd6-foss-2018b-Python-2.7.15
To load the module for transIndel 7098bd6-foss-2018b-Python-2.7.15 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load transIndel/7098bd6-foss-2018b-Python-2.7.15
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the transIndel website.
This version of transIndel has a direct dependency on: foss/2018b HTSeq/0.11.0-foss-2018b-Python-2.7.15 Pysam/0.15.1-foss-2018b-Python-2.7.15 Python/2.7.15-foss-2018b
These versions of transIndel are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 5th June 2019