velocyto 0.17.17-foss-2021a

Deprecated: Use of this version of velocyto is deprecated. More information on our Applications Support and Retention Policy.

Velocyto is a library for the analysis of RNA velocity.

Accessing velocyto 0.17.17-foss-2021a

To load the module for velocyto 0.17.17-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load velocyto/0.17.17-foss-2021a

BEAR Apps Version

2018b

Extensions

  • loompy 3.0.6
  • numpy_groupies 0.9.13
  • velocyto 0.17.17

More Information

For more information visit the velocyto website.

Dependencies

This version of velocyto has a direct dependency on: foss/2021a h5py/3.2.1-foss-2021a matplotlib/3.4.2-foss-2021a numba/0.53.1-foss-2021a Pysam/0.16.0.1-GCC-10.3.0 Python/3.9.5-GCCcore-10.3.0 scikit-learn/0.24.2-foss-2021a SciPy-bundle/2021.05-foss-2021a

Other Versions

These versions of velocyto are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
0.17.17-foss-2019a-Python-3.7.2 2019a

Last modified on 11th May 2022