BEAR Applications: BEDTools 2.30.0-GCC-10.2.0 (for BlueBEAR, BEARCloud VMs, and CaStLeS VMs)

BEDTools 2.30.0-GCC-10.2.0

There is a newer version of BEDTools

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM.

Accessing BEDTools 2.30.0-GCC-10.2.0

To load the module for BEDTools 2.30.0-GCC-10.2.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load BEDTools/2.30.0-GCC-10.2.0

BEAR Apps Version

2019a

More Information

For more information visit the BEDTools website.

Dependencies

This version of BEDTools has a direct dependency on: BamTools/2.5.1-GCC-10.2.0 bzip2/1.0.8-GCCcore-10.2.0 GCC/10.2.0 XZ/5.2.5-GCCcore-10.2.0 zlib/1.2.11-GCCcore-10.2.0

Other Versions

These versions of BEDTools are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
2.30.0-GCC-12.2.0	2022b
2.30.0-GCC-11.3.0	2022a
2.30.0-GCC-11.2.0	2021b
2.30.0-GCC-10.3.0	2021a
2.29.2-GCC-9.3.0	2020a
2.29.2-GCC-8.3.0	2019b
2.28.0-GCC-8.2.0-2.31.1	2019a
2.25.0-foss-2018b	2018b

Last modified on 26th August 2022