Bio-DB-HTS 3.01-GCC-8.2.0-2.31.1-Perl-5.28.1

There is a newer version of Bio-DB-HTS

Read files using HTSlib including BAM/CRAM, Tabix and BCF database files

Accessing Bio-DB-HTS 3.01-GCC-8.2.0-2.31.1-Perl-5.28.1

To load the module for Bio-DB-HTS 3.01-GCC-8.2.0-2.31.1-Perl-5.28.1 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Bio-DB-HTS/3.01-GCC-8.2.0-2.31.1-Perl-5.28.1

BEAR Apps Version




The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the Bio-DB-HTS website.


This version of Bio-DB-HTS has a direct dependency on: BioPerl/1.7.2-GCCcore-8.2.0-Perl-5.28.1 GCC/8.2.0-2.31.1 HTSlib/1.9-GCC-8.2.0-2.31.1 Perl/5.28.1-GCCcore-8.2.0

Required By

This version of Bio-DB-HTS is a direct dependent of: VEP/96.0-foss-2019a-Perl-5.28.1

Other Versions

These versions of Bio-DB-HTS are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
3.01-GCCcore-8.3.0-Perl-5.30.0 2019b

Last modified on 3rd December 2019