CATALYST 1.10.3-foss-2019b-R-3.6.2

CATALYST (Cytometry dATa anALYSis Tools) provides a pipeline for preprocessing of cytometry data, including i) normalization using bead standards, ii) single-cell deconvolution, and iii) bead-based compensation.

Accessing CATALYST 1.10.3-foss-2019b-R-3.6.2

To load the module for CATALYST 1.10.3-foss-2019b-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load CATALYST/1.10.3-foss-2019b-R-3.6.2

BEAR Apps Version

2019a

Extensions

  • ALL 1.28.0
  • CATALYST 1.10.3
  • ConsensusClusterPlus 1.50.0
  • cytolib 1.8.0
  • CytoML 1.12.1
  • diffcyt 1.6.6
  • drc-3.0-1
  • fda 5.1.5
  • flowClust 3.24.0
  • flowCore 1.52.1
  • FlowSOM 1.18.0
  • flowStats 3.44.0
  • flowViz 1.50.0
  • flowWorkspace 3.34.1
  • ggcyto 1.12.0
  • ncdfFlow 2.32.0
  • openCyto 1.24.0
  • RProtoBufLib 1.8.0
  • shinyBS 0.61
  • shinyjs 1.1

More Information

For more information visit the CATALYST website.

Dependencies

This version of CATALYST has a direct dependency on: foss/2019b R/3.6.2-foss-2019b R-bundle-Bioconductor/3.10-foss-2019b-R-3.6.2

Last modified on 4th August 2020