CATALYST 1.10.3-foss-2019b-R-3.6.2
CATALYST (Cytometry dATa anALYSis Tools) provides a pipeline for preprocessing of cytometry data, including i) normalization using bead standards, ii) single-cell deconvolution, and iii) bead-based compensation.Accessing CATALYST 1.10.3-foss-2019b-R-3.6.2
To load the module for CATALYST 1.10.3-foss-2019b-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load CATALYST/1.10.3-foss-2019b-R-3.6.2
BEAR Apps Version
Extensions
- ALL 1.28.0
- CATALYST 1.10.3
- ConsensusClusterPlus 1.50.0
- cytolib 1.8.0
- CytoML 1.12.1
- diffcyt 1.6.6
- drc-3.0-1
- fda 5.1.5
- flowClust 3.24.0
- flowCore 1.52.1
- FlowSOM 1.18.0
- flowStats 3.44.0
- flowViz 1.50.0
- flowWorkspace 3.34.1
- ggcyto 1.12.0
- ncdfFlow 2.32.0
- openCyto 1.24.0
- RProtoBufLib 1.8.0
- shinyBS 0.61
- shinyjs 1.1
More Information
For more information visit the CATALYST website.
Dependencies
This version of CATALYST has a direct dependency on: foss/2019b R/3.6.2-foss-2019b R-bundle-Bioconductor/3.10-foss-2019b-R-3.6.2
Last modified on 4th August 2020