CODEX2 20191031-foss-2019a-R-3.6.0

Full-spectrum copy number variation detection by high-throughput DNA sequencing

Accessing CODEX2 20191031-foss-2019a-R-3.6.0

To load the module for CODEX2 20191031-foss-2019a-R-3.6.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load CODEX2/20191031-foss-2019a-R-3.6.0

BEAR Apps Version

2019a

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the CODEX2 website.

Dependencies

This version of CODEX2 has a direct dependency on: foss/2019a R/3.6.0-foss-2019a R-bundle-Bioconductor/3.9-foss-2019a-R-3.6.0

Last modified on 1st November 2019