Cellpose 0.6.5-foss-2020b
There is a newer version of Cellpose
a generalist algorithm for cellular segmentationAccessing Cellpose 0.6.5-foss-2020b
To load the module for Cellpose 0.6.5-foss-2020b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load Cellpose/0.6.5-foss-2020b
There is a GPU enabled version of this module: Cellpose 0.6.5-fosscuda-2020b
BEAR Apps Version
Extensions
- Cellpose 0.6.5
- natsort 7.1.1
- pyqtgraph 0.12.2
- tifffile 2021.8.8
More Information
For more information visit the Cellpose website.
Dependencies
This version of Cellpose has a direct dependency on: foss/2020b numba/0.53.1-foss-2020b OpenCV/4.5.1-foss-2020b-contrib PyQt5/5.15.1-GCCcore-10.2.0 Python/3.8.6-GCCcore-10.2.0 PyTorch/1.7.1-foss-2020b tqdm/4.56.2-GCCcore-10.2.0
Other Versions
These versions of Cellpose are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
| Version | BEAR Apps Version |
|---|---|
| 2.2-foss-2022a | 2022a |
| 2.2-foss-2022a-CUDA-11.7.0 | 2022a |
| 0.6.5-fosscuda-2020b | 2020b |
| 0.6.5-foss-2021a | 2021a |
| 0.6.5-foss-2021a-CUDA-11.3.1 | 2021a |
Last modified on 11th August 2021