CheckM 1.1.3-foss-2021a

CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes.

Accessing CheckM 1.1.3-foss-2021a

To load the module for CheckM 1.1.3-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load CheckM/1.1.3-foss-2021a

BEAR Apps Version

2019a

More Information

For more information visit the CheckM website.

Dependencies

This version of CheckM has a direct dependency on: DendroPy/4.5.2-GCCcore-10.3.0 foss/2021a HMMER/3.3.2-gompi-2021a matplotlib/3.4.2-foss-2021a pplacer/1.1.alpha19 prodigal/2.6.3-GCCcore-10.3.0 Pysam/0.16.0.1-GCC-10.3.0 Python/3.9.5-GCCcore-10.3.0 SciPy-bundle/2021.05-foss-2021a

Last modified on 5th January 2022